Metagenome-assembled genome: E04__bin114

Organism: uncultured Butyrivibrio sp.
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Butyrivibrio; environmental samples

Attributes

collection date	2016
broad-scale environmental context	host-associated habitat
local-scale environmental context	host-associated habitat
environmental medium	caecal content
geographic location	France
investigation type	metagenome-assembled genome
isolation source	chicken caecal content
project name	MetaChick
sample name	E04__bin114
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2022-06-17T16:20:16Z
ENA-LAST-UPDATE	2022-06-17T16:20:16Z
External Id	SAMEA110135332
INSDC center name	INRA-META
INSDC first public	2022-06-17T16:20:16Z
INSDC last update	2022-06-17T16:20:16Z
INSDC status	public
Submitter Id	E04__bin114
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes 3.15.3
binning parameters	MetaBAT default parameters
binning software	MetaBAT v2.12.1
completeness score	94.97
completeness software	checkm v1.1.3
contamination score	1.57
geographic location (latitude)	48.8583
geographic location (longitude)	2.2923
geographic location (region and locality)	Jouy-en-Josas
metagenomic source	chicken gut metagenome
sample derived from	ERS4542272,ERS4542273,ERS4542274,ERS4542275,ERS4542276,ERS4542277,ERS4542278,ERS4542279,ERS4542280,ERS4542281
scientific_name	uncultured Butyrivibrio sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542272,ERS4542273,ERS4542274,ERS4542275,ERS4542276,ERS4542277,ERS4542278,ERS4542279,ERS4542280,ERS4542281

BioSample