U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: E19__bin151

Identifiers
BioSample: SAMEA110134178; SRA: ERS12232998
Organism
uncultured Rikenellaceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; environmental samples
Attributes
collection date2016
broad-scale environmental contexthost-associated habitat
local-scale environmental contexthost-associated habitat
environmental mediumcaecal content
geographic locationFrance
investigation typemetagenome-assembled genome
isolation sourcechicken caecal content
project nameMetaChick
sample nameE19__bin151
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2022-06-17
ENA-LAST-UPDATE2022-06-17
External IdSAMEA110134178
INSDC center aliasINRA-META
INSDC center nameInstitut National pour la Recherche Agronomique (FRANCE)
INSDC first public2022-06-17T16:20:21Z
INSDC last update2022-06-17T16:20:21Z
INSDC statuspublic
Submitter IdE19__bin151
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes 3.15.3
binning parametersMetaBAT default parameters
binning softwareMetaBAT v2.12.1
completeness score74.68
completeness softwarecheckm v1.1.3
contamination score2.16
geographic location (latitude)48.8583
geographic location (longitude)2.2923
geographic location (region and locality)Jouy-en-Josas
metagenomic sourcechicken gut metagenome
sample derived fromERS4542132,ERS4542133,ERS4542134,ERS4542135,ERS4542136,ERS4542137,ERS4542138,ERS4542139,ERS4542140,ERS4542141
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542132,ERS4542133,ERS4542134,ERS4542135,ERS4542136,ERS4542137,ERS4542138,ERS4542139,ERS4542140,ERS4542141

BioProject
PRJEB53581
Retrieve all samples from this project

Submission
EBI; 2022-06-18
Accession:
SAMEA110134178
ID:
29194353

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center