Metagenome-assembled genome: Lapin-020__bin13

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Result Filters

Organism: uncultured Acinetobacter sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter; environmental samples

Attributes

broad-scale environmental context	host-associated habitat
collection date	2014
environmental medium	feces
geographic location	France
investigation type	metagenome-assembled genome
isolation source	rabbit gut
project name	MicroReset Rabbit
sample name	Lapin-020__bin13
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2022-12-16
ENA-LAST-UPDATE	2022-12-16
External Id	SAMEA112231137
INSDC center alias	INRA-META
INSDC center name	Institut National pour la Recherche Agronomique (FRANCE)
INSDC first public	2022-12-16T00:27:59Z
INSDC last update	2022-12-16T00:27:59Z
INSDC status	public
Submitter Id	Lapin-020__bin13
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes 3.15.3
binning parameters	MetaBAT defaults, SemiBin defaults with rabbit_gut model, metaWRAP bin_refinement module
binning software	MetaBAT v2.12.1, SemiBin, metaWRAP v1.3
completeness score	83.51
completeness software	checkm v1.1.3
contamination score	1.1
geographic location (latitude)	43.527378
geographic location (longitude)	1.4996728
local environmental context	host-associated habitat
metagenomic source	rabbit gut metagenome
sample derived from	ERS14339301
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach