See
Genome Information for Escherichia coli
Bovine mastitis caused by Escherichia coli is a problem of major concern in the dairy industry. This well-known model bacterium has been described either as commensal or pathogenic depending on the strain and environment considered. In the present study we have considered three strains isolated in cases of clinical acute mastitis which may constitute a strong corpus for comparative genomics studies. A fourth pathogenic strain isolated in a bovine host has been added to the sample.
| Accession | PRJEB4582 |
| Type | Umbrella project |
| Organism | Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli |
| Submission | Registration date: 10-Nov-2013
inrae de tours |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 1200 |
| WGS master | 3 |
| Protein Sequences | 23122 |
| Other datasets |
| BioSample | 3 |
| Assembly | 3 |
Escherichia coli Bovine mastitis encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Scaffolds Contigs Total |
2
1
3
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJEB4682 | Scaffolds | Escherichia coli D6-113.11 | Escherichia coli is one of the main pathogenic agent causing inflammatory infections in the bovine udder. Here we report the draft genome of four strains isolated in different cases of severe mastitis. (inrae de tours) | | PRJEB4685 | Scaffolds | Escherichia coli D6-117.07 | Escherichia coli is one of the main pathogenic agent causing inflammatory infections in the bovine udder. Here we report the draft genome of four strains isolated in different cases of severe mastitis. (inrae de tours) | | PRJEB4684 | Contigs | Escherichia coli D6-117.29 | Escherichia coli is one of the main pathogenic agent causing inflammatory infections in the bovine udder. Here we report the draft genome of four strains isolated in different cases of severe mastitis. (inrae de tours) |
|