ID 866831 - BioProject

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Accession: PRJEB55217 ID: 866831

EMG produced TPA metagenomics assembly of PRJNA726355 data set (Responsiveness of rhizosphere bacteria assembled from manipulated soil microbiome suppressed Ralstonia solanacearum invasion).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA726355, and was assembled with metaSPAdes v3. More...

Accession	PRJEB55217
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 6-Aug-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1133
WGS master	90
Publications
PubMed	1
PMC	1
Other datasets
BioSample	90
Assembly	90

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

90
90

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_946480725.1	CAMLKI000000000	SAMEA110699799	-	Cellvibrio mixtus
GCA_946481165.1	CAMLMZ000000000	SAMEA110699782	-	Flavobacterium daejeonense
GCA_946480315.1	CAMLJL000000000	SAMEA110699769	-	Flavobacterium daejeonense
GCA_946480645.1	CAMLKM000000000	SAMEA110699821	-	Ralstonia solanacearum
GCA_950289735.1	CATNSO000000000	SAMEA110466517	Stool culture	Shigella sonnei
GCA_946482645.1	CAMLSC000000000	SAMEA110699817	-	uncultured Acidovorax sp.
GCA_946481185.1	CAMLMT000000000	SAMEA110699742	-	uncultured Acidovorax sp.
GCA_946481215.1	CAMLMN000000000	SAMEA110699773	-	uncultured Acidovorax sp.
GCA_946482405.1	CAMLRK000000000	SAMEA110699779	-	uncultured Agrobacterium sp.
GCA_946481075.1	CAMLMC000000000	SAMEA110699780	-	uncultured Alphaproteobacteria bacterium
GCA_946480475.1	CAMLJM000000000	SAMEA110699753	-	uncultured Alphaproteobacteria bacterium
GCA_946481105.1	CAMLMM000000000	SAMEA110699743	-	uncultured Alphaproteobacteria bacterium
GCA_946481615.1	CAMLOR000000000	SAMEA110699803	-	uncultured Aquimonas sp.
GCA_946480565.1	CAMLKR000000000	SAMEA110699760	-	uncultured Arenimonas sp.
GCA_946480525.1	CAMLLA000000000	SAMEA110699822	-	uncultured Asticcacaulis sp.
GCA_946482045.1	CAMLPZ000000000	SAMEA110699777	-	uncultured Asticcacaulis sp.
GCA_946480385.1	CAMLJP000000000	SAMEA110699752	-	uncultured Azospirillum sp.
GCA_946480715.1	CAMLKK000000000	SAMEA110699755	-	uncultured Bacteriovorax sp.
GCA_946481315.1	CAMLMH000000000	SAMEA110699813	-	uncultured Bacteriovorax sp.
GCA_946482295.1	CAMLRB000000000	SAMEA110699796	-	uncultured Bacteriovorax sp.
GCA_946482085.1	CAMLQL000000000	SAMEA110699785	-	uncultured Bacteriovorax sp.
GCA_946480675.1	CAMLKS000000000	SAMEA110699761	-	uncultured Bacteroidetes bacterium
GCA_946482355.1	CAMLRE000000000	SAMEA110699757	-	uncultured Bdellovibrio sp.
GCA_946480995.1	CAMLMF000000000	SAMEA110699736	-	uncultured Bdellovibrio sp.
GCA_946481425.1	CAMLNT000000000	SAMEA110699808	-	uncultured Brevundimonas sp.
GCA_946480905.1	CAMLLV000000000	SAMEA110699788	-	uncultured Burkholderiales bacterium
GCA_946480465.1	CAMLJY000000000	SAMEA110699754	-	uncultured Burkholderiales bacterium
GCA_946480305.1	CAMLJQ000000000	SAMEA110699768	-	uncultured Caldimonas sp.
GCA_946480425.1	CAMLJT000000000	SAMEA110699750	-	uncultured Caldimonas sp.
GCA_946480535.1	CAMLKA000000000	SAMEA110699762	-	uncultured Candidatus Saccharibacteria bacterium
GCA_946482575.1	CAMLRZ000000000	SAMEA110699818	-	uncultured Candidatus Saccharibacteria bacterium
GCA_946482285.1	CAMLQK000000000	SAMEA110699791	-	uncultured Candidatus Saccharibacteria bacterium
GCA_946481735.1	CAMLOU000000000	SAMEA110699805	-	uncultured Cellvibrio sp.
GCA_946482385.1	CAMLRI000000000	SAMEA110699787	-	uncultured Cellvibrio sp.
GCA_946480695.1	CAMLKG000000000	SAMEA110699749	-	uncultured Cellvibrio sp.
GCA_946481095.1	CAMLML000000000	SAMEA110699734	-	uncultured Cellvibrio sp.
GCA_946482345.1	CAMLRJ000000000	SAMEA110699795	-	uncultured Cellvibrio sp.
GCA_946481195.1	CAMLNG000000000	SAMEA110699735	-	uncultured Chromatiaceae bacterium
GCA_946482615.1	CAMLSF000000000	SAMEA110699815	-	uncultured Chromatiaceae bacterium
GCA_946482325.1	CAMLRA000000000	SAMEA110699784	-	uncultured Chromatiaceae bacterium
GCA_946482115.1	CAMLQP000000000	SAMEA110699793	-	uncultured Comamonadaceae bacterium
GCA_946482595.1	CAMLSD000000000	SAMEA110699810	-	uncultured Comamonadaceae bacterium
GCA_946481355.1	CAMLNH000000000	SAMEA110699783	-	uncultured Curvibacter sp.
GCA_946481005.1	CAMLMG000000000	SAMEA110699741	-	uncultured Devosia sp.
GCA_946481445.1	CAMLOA000000000	SAMEA110699801	-	uncultured Devosia sp.
GCA_946480655.1	CAMLKN000000000	SAMEA110699746	-	uncultured Devosia sp.
GCA_946482335.1	CAMLRG000000000	SAMEA110699759	-	uncultured Duganella sp.
GCA_946481035.1	CAMLNK000000000	SAMEA110699772	-	uncultured Dyadobacter sp.
GCA_946482075.1	CAMLQG000000000	SAMEA110699797	-	uncultured Erythrobacteraceae bacterium
GCA_946480685.1	CAMLLI000000000	SAMEA110699745	-	uncultured Flammeovirgaceae bacterium
GCA_946481605.1	CAMLPA000000000	SAMEA110699820	-	uncultured Flavihumibacter sp.
GCA_946482545.1	CAMLRX000000000	SAMEA110699790	-	uncultured Flavihumibacter sp.
GCA_946480815.1	CAMLLB000000000	SAMEA110699798	-	uncultured Flavobacteriales bacterium
GCA_946482515.1	CAMLRS000000000	SAMEA110699807	-	uncultured Flavobacteriales bacterium
GCA_946480395.1	CAMLJK000000000	SAMEA110699756	-	uncultured Flavobacteriales bacterium
GCA_946482495.1	CAMLRV000000000	SAMEA110699800	-	uncultured Flavobacteriia bacterium
GCA_946482535.1	CAMLRU000000000	SAMEA110699792	-	uncultured Flavobacterium sp.
GCA_946481755.1	CAMLOY000000000	SAMEA110699816	-	uncultured Flavobacterium sp.
GCA_946481155.1	CAMLMK000000000	SAMEA110699740	-	uncultured Flavobacterium sp.
GCA_946481625.1	CAMLOZ000000000	SAMEA110699806	-	uncultured Haloferula sp.
GCA_946480945.1	CAMLLX000000000	SAMEA110699774	-	uncultured Hydrogenophaga sp.
GCA_946480585.1	CAMLKQ000000000	SAMEA110699751	-	uncultured Kangiella sp.
GCA_946481205.1	CAMLNB000000000	SAMEA110699763	-	uncultured Kangiella sp.
GCA_946482415.1	CAMLRC000000000	SAMEA110699737	-	uncultured Limnobacter sp.
GCA_946482315.1	CAMLQZ000000000	SAMEA110699781	-	uncultured Limnobacter sp.
GCA_946482585.1	CAMLSI000000000	SAMEA110699809	-	uncultured Lysobacteraceae bacterium
GCA_946480825.1	CAMLLG000000000	SAMEA110699786	-	uncultured Lysobacteraceae bacterium
GCA_946481585.1	CAMLOF000000000	SAMEA110699819	-	uncultured Macromonas sp.
GCA_946481275.1	CAMLMV000000000	SAMEA110699770	-	uncultured Massilia sp.
GCA_946481235.1	CAMLME000000000	SAMEA110699766	-	uncultured Methylobacillus sp.
GCA_946481135.1	CAMLMQ000000000	SAMEA110699765	-	uncultured Microbacteriaceae bacterium
GCA_946481565.1	CAMLOD000000000	SAMEA110699812	-	uncultured Microbacterium sp.
GCA_946482625.1	CAMLSH000000000	SAMEA110699804	-	uncultured Opitutaceae bacterium
GCA_946481515.1	CAMLNV000000000	SAMEA110699814	-	uncultured Pseudomonas sp.
GCA_946480365.1	CAMLJV000000000	SAMEA110699758	-	uncultured Pseudoxanthomonas sp.
GCA_946480855.1	CAMLLP000000000	SAMEA110699789	-	uncultured Rhizobium sp.
GCA_946480925.1	CAMLLU000000000	SAMEA110699776	-	uncultured Rivibacter sp.
GCA_946481025.1	CAMLNA000000000	SAMEA110699739	-	uncultured Rivibacter sp.
GCA_946480605.1	CAMLKW000000000	SAMEA110699748	-	uncultured Roseateles sp.
GCA_946482395.1	CAMLRD000000000	SAMEA110699738	-	uncultured Roseateles sp.
GCA_946481145.1	CAMLMJ000000000	SAMEA110699747	-	uncultured Sediminibacterium sp.
GCA_946481465.1	CAMLOC000000000	SAMEA110699802	-	uncultured Shinella sp.
GCA_946481175.1	CAMLMW000000000	SAMEA110699767	-	uncultured Sphingobacteriaceae bacterium
GCA_946482655.1	CAMLSA000000000	SAMEA110699811	-	uncultured Sphingomonas sp.
GCA_946482305.1	CAMLRF000000000	SAMEA110699778	-	uncultured Sphingopyxis sp.
GCA_946480345.1	CAMLJR000000000	SAMEA110699764	-	uncultured Spongiibacteraceae bacterium
GCA_946480555.1	CAMLLE000000000	SAMEA110699744	-	uncultured Verrucomicrobia subdivision 3 bacterium
GCA_946480965.1	CAMLMI000000000	SAMEA110699775	-	uncultured Verrucomicrobiales bacterium
GCA_946481225.1	CAMLNJ000000000	SAMEA110699771	-	uncultured Verrucomicrobiota bacterium
GCA_946482165.1	CAMLQS000000000	SAMEA110699794	-	uncultured Verrucomicrobiota bacterium

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EMG produced TPA metagenomics assembly of PRJNA726355 data set (Responsiveness of rhizosphere bacteria assembled from manipulated soil microbiome suppressed Ralstonia solanacearum invasion).

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