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gsa21314v01

Organism name:
Staphylococcus aureus subsp. aureus 21314 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 21314
BioSample:
SAMN00116867
BioProject:
PRJNA53677
Submitter:
J. Craig Venter Institute
Date:
2014/04/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000627015.1 (latest)
RefSeq assembly accession:
GCF_000627015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JHPY01
Assembly method:
Newbler v. 2.3
Expected final version:
yes
Genome coverage:
20x
Sequencing technology:
454 GS FLX Titanium

IDs: 144031 [UID] 998368 [GenBank] 1321078 [RefSeq]

See Genome Information for Staphylococcus aureus

Pathogen Detection Resources

There are 91387 assemblies for this organism

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History (Show revision history)

Comment

This project has been funded in whole or in part with federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services through the Genomic Sequencing Centers for Infectious ... Diseases under contract number HHSN272200900007C.  more

Global statistics

Total sequence length2,691,376
Total ungapped length2,691,376
Number of contigs25
Contig N50445,866
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,691,376252,691,376445,86600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus aureus subsp. aureus 21314Staphylococcus aureus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000330825.2Staphylococcus aureus subsp. aureus DSM 20231type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000330825.2Staphylococcus aureustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1993.9291.70
Best-match type97.1993.9291.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna