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ASM75779v1

Organism name:
Methylobacterium oryzae CBMB20 (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: CBMB20
BioSample:
SAMN03075686
BioProject:
PRJNA41901
Submitter:
KRIBB
Date:
2014/09/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000757795.1 (latest)
RefSeq assembly accession:
GCF_000757795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 212581 [UID] 1303868 [GenBank] 1640858 [RefSeq]

See Genome Information for Methylobacterium oryzae

There are 6 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
This bacteria is available from Tong-Min Sa, Department of Agricultural Chemistry, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju Chungbuk 361-763, ... Republic of Korea (tomsa@chungbuk.ac.kr)  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000757795.1-RS_2024_03_28
Annotation Date::03/28/2024 02:05:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,838
CDSs (total)::5,763
Genes (coding)::5,658
CDSs (with protein)::5,658
Genes (RNA)::75
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::58
ncRNAs::5
Pseudo Genes (total)::105
CDSs (without protein)::105
Pseudo Genes (ambiguous residues)::0 of 105
Pseudo Genes (frameshifted)::46 of 105
Pseudo Genes (incomplete)::65 of 105
Pseudo Genes (internal stop)::25 of 105
Pseudo Genes (multiple problems)::29 of 105
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,286,629
Total ungapped length6,286,629
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000757815.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP003811.1=NZ_CP003811.1

Assembly statistics

MoleculeTotal
Length
Chromosome 6,286,629

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylobacterium oryzae CBMB20Methylobacterium oryzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001936175.1Methylobacterium phyllosphaeraesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.9391.4991.06

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchassembly is type-material