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ASM18197v1

Organism name:
Burkholderia ambifaria IOP40-10 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: IOP40-10
BioSample:
SAMN00000046
BioProject:
PRJNA20669
Submitter:
US DOE Joint Genome Institute (JGI-PGF)
Date:
2008/03/17
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000181975.1 (latest)
RefSeq assembly accession:
GCF_000181975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ABLC01

IDs: 230138 [UID] 230118 [GenBank] 230138 [RefSeq]

See Genome Information for Burkholderia ambifaria

There are 100 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 4082282
Source DNA and Bacteria available from James Tiedje (tiedjej@msu.edu)
Contacts: James Tiedje (tiedjej@msu.edu)
 Paul Richardson (microbes@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and ... use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length7,689,995
Total ungapped length7,689,995
Number of contigs629
Contig N5024,355
Contig L5089
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)629

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,689,9956297,689,99524,35500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia ambifaria IOP40-10Burkholderia ambifaria

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000203915.1Burkholderia ambifaria AMMDtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000203915.1Burkholderia ambifariatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.8580.6982.42
Best-match type96.8580.6982.42

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna