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ASM77397v1

Organism name:
Erwinia typographi (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: M043b
BioSample:
SAMN03105172
BioProject:
PRJNA263655
Submitter:
University of Malaya
Date:
2014/11/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000773975.1 (latest)
RefSeq assembly accession:
GCF_000773975.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JRUQ01
Assembly method:
CLC NGS Cell v. may-2014
Expected final version:
yes
Genome coverage:
45.16x
Sequencing technology:
Illumina MiSeq

IDs: 220601 [UID] 1373188 [GenBank] 1433438 [RefSeq]

See Genome Information for Erwinia typographi

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/12/2014 20:27:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.8 (rev. 448375)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::5,472
CDS::5,085
Pseudo Genes::308
rRNAs::8 ( 5S, 16S, 23S )
tRNAs::66
ncRNA::5
Frameshifted Genes::37
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,749,517
Total ungapped length5,749,517
Number of contigs137
Contig N50142,798
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)137

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,749,5171375,749,517142,79800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Erwinia typographiErwinia typographi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019132875.1Erwinia phyllosphaeraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.8424.1629.36

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna