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URL -- http://www.jgi.doe.gov
JGI Project ID: 4001622
Source DNA and bacteria available from Wayne Reeve (reeve@murdoch.edu.au)
Contacts: Wayne Reeve (reeve@murdoch.edu.au)
 Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LLNL
Finished microbial genomes have been curated to close ... all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000017145.1-RS_2024_03_15
Annotation Date::03/15/2024 03:53:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,520
CDSs (total)::6,452
Genes (coding)::6,144
CDSs (with protein)::6,144
Genes (RNA)::68
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::55
ncRNAs::4
Pseudo Genes (total)::308
CDSs (without protein)::308
Pseudo Genes (ambiguous residues)::0 of 308
Pseudo Genes (frameshifted)::194 of 308
Pseudo Genes (incomplete)::203 of 308
Pseudo Genes (internal stop)::37 of 308
Pseudo Genes (multiple problems)::111 of 308
##Genome-Annotation-Data-END##

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