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ASM98032v1

Organism name:
Clostridium sp. A254.MGS-251 (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
A254.MGS-251
BioSample:
SAMN03449994
BioProject:
PRJNA277012
Submitter:
The Mayo Clinic
Date:
2015/04/24
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_000980325.1 (latest)
RefSeq assembly accession:
GCF_000980325.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LARA01
Assembly method:
Velvet v. 1.2.10; Spades v. 3.1.0
Expected final version:
yes
Genome coverage:
75.0x
Sequencing technology:
Illumina MiSeq

IDs: 325851 [UID] 1738768 [GenBank] 1739798 [RefSeq]

See Genome Information for Clostridium sp. A254.MGS-251

History (Show revision history)

Comment

Global statistics

Total sequence length1,983,932
Total ungapped length1,983,811
Gaps between scaffolds0
Number of scaffolds224
Scaffold N5078,179
Scaffold L506
Number of contigs226
Contig N5078,179
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)224

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,983,9322241,983,81178,17920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium sp. A254.MGS-251Clostridium sp. A254.MGS-251

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900291955.1Pseudoruminococcus massiliensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.130.440.36

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena