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ASM75786v1

Organism name:
Prochlorococcus sp. MIT 0801 (cyanobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: MIT 0801
BioSample:
SAMN02769563
BioProject:
PRJNA246696
Submitter:
MIT
Date:
2014/09/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000757865.1 (latest)
RefSeq assembly accession:
GCF_000757865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6
Genome coverage:
200x
Sequencing technology:
Illumina GAIIx

IDs: 212621 [UID] 1303948 [GenBank] 1514828 [RefSeq]

See Genome Information for Prochlorococcus sp. MIT 0801

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/02/2023 02:32:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,193
CDSs (total)::2,148
Genes (coding)::2,139
CDSs (with protein)::2,139
Genes (RNA)::45
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::39
ncRNAs::3
Pseudo Genes (total)::9
CDSs (without protein)::9
Pseudo Genes (ambiguous residues)::0 of 9
Pseudo Genes (frameshifted)::4 of 9
Pseudo Genes (incomplete)::6 of 9
Pseudo Genes (internal stop)::4 of 9
Pseudo Genes (multiple problems)::4 of 9
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,929,203
Total ungapped length1,929,203
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000757875.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP007754.1=NZ_CP007754.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,929,203

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Prochlorococcus sp. MIT 0801Prochlorococcus sp. MIT 0801

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000011465.1Prochlorococcus marinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.510.480.56

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena