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Myco_tube_2104HD_V1

Organism name:
Mycobacterium tuberculosis 2104HD (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2104HD
BioSample:
SAMN02567698
BioProject:
PRJNA233350
Submitter:
Broad Institute
Date:
2014/06/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000711635.1 (latest)
RefSeq assembly accession:
GCF_000711635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JKBV01
Assembly method:
allpaths v. R48559
Genome coverage:
79.0x
Sequencing technology:
Illumina

IDs: 189011 [UID] 1147558 [GenBank] 1233698 [RefSeq]

See Genome Information for Mycobacterium tuberculosis

Pathogen Detection Resources

There are 7684 assemblies for this organism

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History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length4,412,659
Total ungapped length4,412,659
Number of contigs92
Contig N50107,240
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)92

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced4,412,659924,412,659107,24000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycobacterium tuberculosis 2104HDMycobacterium tuberculosis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000195955.2Mycobacterium tuberculosis H37Rvtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000195955.2Mycobacterium tuberculosistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9698.9398.95
Best-match type99.9698.9398.95

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna