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P aeruginosa VRFPA08

Description:
Pseudomonas aeruginosa VRFPA08
Organism name:
Pseudomonas aeruginosa VRFPA08 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: VRFPA08
BioSample:
SAMN02472103
BioProject:
PRJNA230869
Submitter:
SANKARA NETHRALAYA, VISION RESEARCH FOUNDATION
Date:
2013/12/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000506885.1 (latest)
RefSeq assembly accession:
GCF_000506885.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZHU01
Assembly method:
Mira v. 3.4.1.1
Expected final version:
yes
Reference guided assembly:
CP004061.1
Genome coverage:
70x
Sequencing technology:
IonTorrent

IDs: 85911 [UID] 874648 [GenBank] 883068 [RefSeq]

See Genome Information for Pseudomonas aeruginosa

There are 30774 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Reference-guided assembly based on Pseudomonas aeruginosa B136-33, deposited in CP004061.1
Bacteria available from Dr. J. Malathi, L & T Microbiology ... Research Centre, Vision Research Foundation, Sankara Nethralaya, No.18, College Road, Nungambakkam, Chennai, Tamil Nadu 6000 06, India. Source DNA available from Mr. N. Murugan, (SRF) L & T Microbiology Research Centre, Vision Research Foundation, Sankara Nethralaya, No.18, College Road, Nungambakkam, Chennai, Tamil Nadu 6000 06, India.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::12/09/2013 11:32:36
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::2.3 (rev. 418893)
Genes::6,794
CDS::6,661
Pseudo Genes::51
rRNAs::14 ( 5S, 16S, 23S )
tRNAs::64
ncRNA::4
Frameshifted Genes::50
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,035,331
Total ungapped length7,035,331
Number of contigs197
Contig N5070,821
Contig L5032
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)197

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,035,3311977,035,33170,82100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas aeruginosa VRFPA08Pseudomonas aeruginosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001042925.1Pseudomonas aeruginosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001042925.1Pseudomonas aeruginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9285.9796.14
Best-match type98.9285.9796.14

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna