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ASM70134v1

Organism name:
Bradyrhizobium sp. URHD0069 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: URHD0069
BioSample:
SAMN02841140
BioProject:
PRJNA213792
Submitter:
DOE Joint Genome Institute
Date:
2014/06/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000701345.1 (latest)
RefSeq assembly accession:
GCF_000701345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JNIJ01
Assembly method:
Unknown program v. before 2014-03-17
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 183841 [UID] 1108198 [GenBank] 1143698 [RefSeq]

See Genome Information for Bradyrhizobium sp. URHD0069

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1024187
Source DNA and Organism available from Eoin Brodie (ELBrodie@lbl.gov)
Source DNA available from Eoin Brodie (ELBrodie@lbl.gov)
Organism available from Eoin Brodie (ELBrodie@lbl.gov)
Contacts: Eoin Brodie (ELBrodie@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
investigation_type::bacteria_archaea
project_name::Bradyrhizobium sp. URHD0069
sequencing_meth::WGS
GOLD Stamp ID::Gi0051448
Gene Calling Method::Prodigal 2.5
Isolation Site::unknown
##MIGS-Data-END##

Global statistics

Total sequence length6,793,945
Total ungapped length6,793,222
Gaps between scaffolds0
Number of scaffolds129
Scaffold N50128,124
Scaffold L5016
Number of contigs132
Contig N50128,124
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)132

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,793,9451296,793,222128,12430

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bradyrhizobium sp. URHD0069Bradyrhizobium sp. URHD0069

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_018736085.1Bradyrhizobium sediministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.4635.9043.91

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna