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ASM40155v1

Organism name:
Aeromonas hydrophila ML09-119 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ML09-119
BioSample:
SAMN02603614
BioProject:
PRJNA188141
Submitter:
Mississippi State University
Date:
2013/05/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000401555.1 (latest)
RefSeq assembly accession:
GCF_000401555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CLC Genomic workbench from CLC Bio v. 5.0.1
Reference guided assembly:
NC_008570.1
Genome coverage:
90.7X
Sequencing technology:
454; Illumina

IDs: 706158 [UID] 692898 [GenBank] 706158 [RefSeq]

See Genome Information for Aeromonas hydrophila

There are 482 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/14/2023 01:22:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,649
CDSs (total)::4,499
Genes (coding)::4,434
CDSs (with protein)::4,434
Genes (RNA)::150
rRNAs::11, 10, 10 (5S, 16S, 23S)
complete rRNAs::11, 10, 10 (5S, 16S, 23S)
tRNAs::112
ncRNAs::7
Pseudo Genes (total)::65
CDSs (without protein)::65
Pseudo Genes (ambiguous residues)::0 of 65
Pseudo Genes (frameshifted)::33 of 65
Pseudo Genes (incomplete)::35 of 65
Pseudo Genes (internal stop)::16 of 65
Pseudo Genes (multiple problems)::15 of 65
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,024,500
Total ungapped length5,024,500
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000401565.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP005966.1=NC_021290.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,024,500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aeromonas hydrophila ML09-119Aeromonas hydrophila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000014805.1Aeromonas hydrophila subsp. hydrophila ATCC 7966type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000014805.1Aeromonas hydrophilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.9586.7891.90
Best-match type96.9586.7891.90

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna