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SOAPdenovo v1.05

Organism name:
Hyphomonas johnsonii MHS-2 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MHS-2
BioSample:
SAMN02746698
BioProject:
PRJNA186166
Submitter:
The Third Institute of State Oceanic Administration (SOA)
Date:
2014/05/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000685275.1 (latest)
RefSeq assembly accession:
GCF_000685275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ARYK01
Assembly method:
SOAPdenovo v. 1.05
Expected final version:
no
Genome coverage:
130.0x
Sequencing technology:
Illumina GAIIx

IDs: 175651 [UID] 1063598 [GenBank] 1437838 [RefSeq]

See Genome Information for Hyphomonas johnsonii

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.
Bacteria are available from: ... Dr. Zongze Shao, The Third Institute of State Oceanic Administration (SOA), 184 Daxue Road, Xiamen, Fujian, 361005, China.  more

Global statistics

Total sequence length3,618,770
Total ungapped length3,618,770
Number of contigs18
Contig N50372,697
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,618,770183,618,770372,69700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Hyphomonas johnsonii MHS-2Hyphomonas johnsonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000682695.1Hyphomonas chukchiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.8544.5041.74

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected