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MGS162

Organism name:
Phocaeicola coprocola CAG:162 (CFB group bacteria)
Taxonomy check:
OK
BioSample:
SAMEA3138652
BioProject:
PRJEB733
Submitter:
DTU
Date:
2013/07/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_000435315.1 (latest)
RefSeq assembly accession:
GCF_000435315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CBCJ01
Genome coverage:
486x

IDs: 43461 [UID] 742288 [GenBank] 797488 [RefSeq]

See Genome Information for Phocaeicola coprocola

Pathogen Detection Resources

There are 53 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,142,034
Total ungapped length3,138,897
Gaps between scaffolds0
Number of scaffolds183
Scaffold N5034,044
Scaffold L5031
Number of contigs265
Contig N5023,850
Contig L5041
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)265

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,142,0341833,138,89734,044820

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola coprocola CAG:162Phocaeicola coprocola

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154845.1Phocaeicola coprocola DSM 17136suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154845.1Phocaeicola coprocolasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8488.1464.41
Best-match type98.8488.1464.41

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna