U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM105079v1

Organism name:
Yersinia enterocolitica (type O:3) str. YE12/03 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: YE12/03
Isolate:
host faecal sample
BioSample:
SAMEA3146322
BioProject:
PRJEB665
Submitter:
WTSI
Date:
2013/06/05
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_001050795.1 (latest)
RefSeq assembly accession:
GCF_001050795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAQG01

IDs: 362281 [UID] 1862248 [GenBank] 1863718 [RefSeq]

See Genome Information for Yersinia enterocolitica

There are 2322 assemblies for this organism

See more

History (Show revision history)

Comment

Data release policy http://www.sanger.ac.uk/legal/#t_2

Global statistics

Total sequence length4,528,241
Total ungapped length4,527,941
Gaps between scaffolds0
Number of scaffolds1
Scaffold N504,528,241
Scaffold L501
Number of contigs4
Contig N502,395,791
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,528,24114,527,9414,528,24130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia enterocolitica (type O:3) str. YE12/03Yersinia enterocolitica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900637005.1Yersinia enterocolitica subsp. palearcticatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637005.1Yersinia enterocoliticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9499.6098.90
Best-match type99.9499.6098.90

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna