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RhodoR1101_1.0

Organism name:
Rhodococcus sp. R1101 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: R1101
BioSample:
SAMN02472115
BioProject:
PRJNA157995
Submitter:
Walter Reed Army Institute of Research
Date:
2012/07/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000278445.1 (latest)
RefSeq assembly accession:
GCF_000278445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AJVB01
Assembly method:
Newbler v. 2.5.3
Genome coverage:
14.0x
Sequencing technology:
454

IDs: 617238 [UID] 399368 [GenBank] 617238 [RefSeq]

See Genome Information for Rhodococcus sp. R1101

History (Show revision history)

Comment

Bacteria and source DNA are available from: LTC Paige Waterman, Multidrug-resistant organism Surveillance Repository and Network, Walter Reed Army Institute of Research, 503 Robert Grant Avenue, Silver Spring, MD 20910, USA.

Global statistics

Total sequence length4,651,593
Total ungapped length4,651,593
Number of contigs990
Contig N508,355
Contig L50148
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)990

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,651,5939904,651,5938,35500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Rhodococcus sp. R1101Rhodococcus sp. R1101

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001646655.1Rhodococcus gordoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.4093.2889.94

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna