U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM81568v1

Organism name:
Shigella boydii 08-0009 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 08-0009
BioSample:
SAMN03276475
BioProject:
PRJNA171079
Submitter:
Institute for Genome Sciences
Date:
2015/01/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000815685.1 (latest)
RefSeq assembly accession:
GCF_000815685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AMJZ01
Assembly method:
AMOScmp v. 3.1.0
Genome coverage:
101x
Sequencing technology:
Illumina GA-II

IDs: 241511 [UID] 1465058 [GenBank] 1466388 [RefSeq]

See Genome Information for Shigella boydii

There are 773 assemblies for this organism

See more

History (Show revision history)

Comment

Source DNA available from Dr. David Rasko, University of Maryland School of Medicine, 801 West Baltimore Street, Baltimore, MD, 21201, drasko@som.umaryland.edu

Global statistics

Total sequence length4,864,228
Total ungapped length4,864,228
Number of contigs165
Contig N50141,339
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)165

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,864,2281654,864,228141,33900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Shigella boydii 08-0009Shigella boydii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_016726285.1Shigella boydiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016726285.1Shigella boydiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9191.6998.05
Best-match type99.9191.6998.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna