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J01099

Organism name:
Enterobacter hormaechei subsp. hoffmannii (CDC Enteric Group 75)
Taxonomy check:
OK
Isolate:
J01099
BioSample:
SAMEA113581061
BioProject:
PRJEB62643
Submitter:
medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen
Date:
2023/07/27
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_954777715.1 (latest)
RefSeq assembly accession:
GCF_954777715.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CATOXS01
Assembly method:
Spades
Genome coverage:
100x
Sequencing technology:
Illumina NextSeq 550

IDs: 17852771 [UID] 45714218 [GenBank] 45858258 [RefSeq]

See Genome Information for Enterobacter hormaechei

There are 7225 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,775,367
Total ungapped length4,775,143
Gaps between scaffolds0
Number of scaffolds117
Scaffold N50395,017
Scaffold L503
Number of contigs118
Contig N50395,017
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)117

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,775,3671174,775,143395,01710

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter hormaechei subsp. hoffmanniiEnterobacter hormaechei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729745.1Enterobacter hormaechei subsp. hoffmanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729745.1Enterobacter hormaecheitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0889.5891.43
Best-match type99.0889.5891.43

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna