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Source database (GenBank or RefSeq) File type

AI2935v1_cpp

Organism name:: Citrobacter freundii (enterobacteria)
Taxonomy check:: OK
Isolate:: 112
BioSample:: SAMEA8065770
BioProject:: PRJEB42440
Submitter:: CNAG-CRG
Date:: 2022/06/24
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_905330765.2 (latest)
RefSeq assembly accession:: GCF_905330765.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 329x

IDs: 13067501 [UID] 34139198 [GenBank] 34307808 [RefSeq]

See Genome Information for Citrobacter freundii

Pathogen Detection Resources

There are 2639 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_905330765.2	=	GCF_905330765.2	AI2935v1_cpp	Complete Genome	Latest GenBank, Latest RefSeq
GCA_905330765.1	=	GCF_905330765.1	AI2935v1	Contig	Replaced GenBank, RefSeq suppressed

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::01/24/2024 14:50:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,632
CDSs (total)::5,507
Genes (coding)::5,383
CDSs (with protein)::5,383
Genes (RNA)::125
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::90
ncRNAs::10
Pseudo Genes (total)::124
CDSs (without protein)::124
Pseudo Genes (ambiguous residues)::0 of 124
Pseudo Genes (frameshifted)::32 of 124
Pseudo Genes (incomplete)::91 of 124
Pseudo Genes (internal stop)::21 of 124
Pseudo Genes (multiple problems)::17 of 124
Pseudo Genes (short protein)::1 of 124
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,708,945
Total ungapped length	5,708,945
Total number of chromosomes and plasmids	5

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	OW995941.1	=	NZ_OW995941.1
Plasmid P1	OW995942.1	=	NZ_OW995942.1
Plasmid P2	OW995943.1	=	NZ_OW995943.1
Plasmid P3	OW995944.1	=	NZ_OW995944.1
Plasmid P4	OW995945.1	=	NZ_OW995945.1

Molecule	Total Length
All	5,708,945
Chromosome	5,218,036
Plasmid P1	250,090
Plasmid P2	90,277
Plasmid P3	86,953
Plasmid P4	63,589

	ANI	Query coverage	Subject coverage
Declared type	98.93	78.90	90.80
Best-match type	98.93	78.90	90.80

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AI2935v1_cpp

See Genome Information for Citrobacter freundii

Pathogen Detection Resources

There are 2639 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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