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ASM3714537v1

Organism name:
Pantoea vagans (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: USHLN165
BioSample:
SAMN37642956
BioProject:
PRJNA1023190
Submitter:
University of Wisconsin-Madison
Date:
2024/03/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_037145375.1 (latest)
RefSeq assembly accession:
GCF_037145375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JBBCXN01
Assembly method:
Shovill v. 1.1.0
Expected final version:
yes
Genome coverage:
88x
Sequencing technology:
Illumina NovaSeq

IDs: 21850811 [UID] 54960338 [GenBank] 54998318 [RefSeq]

See Genome Information for Pantoea vagans

There are 33 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length5,033,078
Total ungapped length5,033,078
Number of contigs55
Contig N50454,998
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)55

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,033,078555,033,078454,99800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pantoea vagansPantoea vagans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004792415.1Pantoea vaganstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004792415.1Pantoea vaganstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.0582.0286.18
Best-match type96.0582.0286.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna