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Source database (GenBank or RefSeq) File type

ASM3316275v1

Organism name:: Citrobacter freundii (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: F3121
BioSample:: SAMN37878049
BioProject:: PRJNA1029736
Submitter:: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)
Date:: 2023/10/31
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_033162755.1 (latest)
RefSeq assembly accession:: GCF_033162755.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: unicycler v. v0.4.8
Expected final version:: yes
Genome coverage:: 200.0x
Sequencing technology:: Oxford Nanopore

IDs: 19466011 [UID] 49489558 [GenBank] 49505088 [RefSeq]

See Genome Information for Citrobacter freundii

Pathogen Detection Resources

There are 2639 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_033162755.1	=	GCF_033162755.1	ASM3316275v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::11/02/2023 06:50:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,312
CDSs (total)::5,191
Genes (coding)::5,046
CDSs (with protein)::5,046
Genes (RNA)::121
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::85
ncRNAs::11
Pseudo Genes (total)::145
CDSs (without protein)::145
Pseudo Genes (ambiguous residues)::0 of 145
Pseudo Genes (frameshifted)::47 of 145
Pseudo Genes (incomplete)::99 of 145
Pseudo Genes (internal stop)::30 of 145
Pseudo Genes (multiple problems)::29 of 145
Pseudo Genes (short protein)::1 of 145
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,431,280
Total ungapped length	5,431,280
Total number of chromosomes and plasmids	5

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP137128.1	=	NZ_CP137128.1
Plasmid pF3121-1	CP137130.1	=	NZ_CP137130.1
Plasmid pF3121-4	CP137131.1	=	NZ_CP137131.1
Plasmid pF3121-IMP	CP137127.1	=	NZ_CP137127.1
Plasmid pF3121-NDM	CP137129.1	=	NZ_CP137129.1

Molecule	Total Length
All	5,431,280
Chromosome	5,223,149
Plasmid pF3121-1	101,872
Plasmid pF3121-4	3,481
Plasmid pF3121-IMP	49,205
Plasmid pF3121-NDM	53,573

	ANI	Query coverage	Subject coverage
Declared type	99.00	82.31	90.12
Best-match type	99.00	82.31	90.12

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ASM3316275v1

See Genome Information for Citrobacter freundii

Pathogen Detection Resources

There are 2639 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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