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ASM3016863v1

Organism name:
Legionella pneumophila (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: D5573
BioSample:
SAMN33057357
BioProject:
PRJNA931318
Submitter:
Pneumonia Response and Surveillance Laboratory (CDC)
Date:
2023/06/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_030168635.1 (latest)
RefSeq assembly accession:
GCF_030168635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
225x
Sequencing technology:
PacBio RSII

IDs: 16814271 [UID] 43202938 [GenBank] 43254918 [RefSeq]

See Genome Information for Legionella pneumophila

There are 5728 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/06/2023 18:24:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,204
CDSs (total)::3,148
Genes (coding)::3,099
CDSs (with protein)::3,099
Genes (RNA)::56
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::49
CDSs (without protein)::49
Pseudo Genes (ambiguous residues)::0 of 49
Pseudo Genes (frameshifted)::29 of 49
Pseudo Genes (incomplete)::21 of 49
Pseudo Genes (internal stop)::5 of 49
Pseudo Genes (multiple problems)::5 of 49
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,577,282
Total ungapped length3,577,282
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_030168645.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP117817.1=NZ_CP117817.1
Plasmid unnamedCP117816.1=NZ_CP117816.1

Assembly statistics

MoleculeTotal
Length
All3,577,282
Chromosome 3,521,075
Plasmid unnamed56,207

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella pneumophilaLegionella pneumophila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006364635.1Legionella pneumophilatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006364635.1Legionella pneumophilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.9284.1188.26
Best-match type96.9284.1188.26

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna