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ASM2611590v1

Organism name:
Enterobacter hormaechei subsp. hoffmannii (CDC Enteric Group 75)
Taxonomy check:
OK
Infraspecific name:
Strain: HD7397
BioSample:
SAMN27409729
BioProject:
PRJNA824645
Submitter:
The Second Affiliated Hospital of Soochow University
Date:
2022/11/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_026115905.1 (latest)
RefSeq assembly accession:
GCF_026115905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAMFWA01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina NovaSeq

IDs: 14374871 [UID] 37310628 [GenBank] 37350068 [RefSeq]

See Genome Information for Enterobacter hormaechei

There are 7225 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/16/2022 23:06:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,451
CDSs (total)::4,367
Genes (coding)::4,341
CDSs (with protein)::4,341
Genes (RNA)::84
rRNAs::1, 4, 5 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::4, 5 (16S, 23S)
tRNAs::69
ncRNAs::5
Pseudo Genes (total)::26
CDSs (without protein)::26
Pseudo Genes (ambiguous residues)::0 of 26
Pseudo Genes (frameshifted)::14 of 26
Pseudo Genes (incomplete)::17 of 26
Pseudo Genes (internal stop)::4 of 26
Pseudo Genes (multiple problems)::7 of 26
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,667,991
Total ungapped length4,667,991
Number of contigs25
Contig N50512,128
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,667,991254,667,991512,12800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacter hormaechei subsp. hoffmanniiEnterobacter hormaechei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001729725.1Enterobacter hormaechei subsp. steigerwaltiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001729725.1Enterobacter hormaecheitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0093.6891.44
Best-match type99.0093.6891.44

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna