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ASM2287010v1

Organism name:
Legionella pneumophila subsp. pneumophila (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PartS-Lpneumophila-RM8376
BioSample:
SAMN14078810
BioProject:
PRJNA605254
Submitter:
National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute
Date:
2022/04/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_022870105.1 (latest)
RefSeq assembly accession:
GCF_022870105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. 2.5; Pilon v. 1.23
Genome coverage:
1250x
Sequencing technology:
Illumina; PacBio

IDs: 12473211 [UID] 32656028 [GenBank] 32769748 [RefSeq]

See Genome Information for Legionella pneumophila

There are 5728 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from ATCC
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_022870105.1-RS_2024_04_26
Annotation Date::04/26/2024 04:55:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,050
CDSs (total)::2,993
Genes (coding)::2,975
CDSs (with protein)::2,975
Genes (RNA)::57
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::18
CDSs (without protein)::18
Pseudo Genes (ambiguous residues)::0 of 18
Pseudo Genes (frameshifted)::8 of 18
Pseudo Genes (incomplete)::11 of 18
Pseudo Genes (internal stop)::2 of 18
Pseudo Genes (multiple problems)::3 of 18
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,409,194
Total ungapped length3,409,194
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_022870115.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP064378.1=NZ_CP064378.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,409,194

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella pneumophila subsp. pneumophilaLegionella pneumophila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002082955.2Legionella pneumophila subsp. pneumophilatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002082955.2Legionella pneumophilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.0098.51
Best-match type99.99100.0098.51

ANI result

Taxonomy check statusBest match statusComment
OKsubspecies-matchna