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Source database (GenBank or RefSeq) File type

ASM303245v1

Organism name:: Pantoea vagans (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: PV989
BioSample:: SAMN08800199
BioProject:: PRJNA445847
Submitter:: Wenzhou Medical University
Date:: 2018/04/04
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_003032455.1 (latest)
RefSeq assembly accession:: GCF_003032455.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: canu v. 1.2
Expected final version:: yes
Genome coverage:: 100.0x
Sequencing technology:: PacBio

IDs: 1657881 [UID] 6318628 [GenBank] 6365078 [RefSeq]

See Genome Information for Pantoea vagans

Pathogen Detection Resources

There are 33 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003032455.1	=	GCF_003032455.1	ASM303245v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from School of Laboratory Medicine and Life Science/Institute of Biomedical Informatics, Wenzhou Medical University, Wenzhou ... 325035, China.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::01/17/2024 11:18:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,509
CDSs (total)::4,402
Genes (coding)::4,347
CDSs (with protein)::4,347
Genes (RNA)::107
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::78
ncRNAs::7
Pseudo Genes (total)::55
CDSs (without protein)::55
Pseudo Genes (ambiguous residues)::0 of 55
Pseudo Genes (frameshifted)::25 of 55
Pseudo Genes (incomplete)::27 of 55
Pseudo Genes (internal stop)::11 of 55
Pseudo Genes (multiple problems)::9 of 55
Pseudo Genes (short protein)::1 of 55
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,839,154
Total ungapped length	4,839,154
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP028349.1	=	NZ_CP028349.1
Plasmid pPV989-167	CP028351.1	=	NZ_CP028351.1
Plasmid pPV989-508	CP028350.1	=	NZ_CP028350.1
Plasmid pPV989-94	CP028352.1	=	NZ_CP028352.1

Molecule	Total Length
All	4,839,154
Chromosome	4,071,006
Plasmid pPV989-167	166,637
Plasmid pPV989-508	507,680
Plasmid pPV989-94	93,831

	ANI	Query coverage	Subject coverage
Declared type	97.37	88.32	89.22
Best-match type	97.37	88.32	89.22

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ASM303245v1

See Genome Information for Pantoea vagans

Pathogen Detection Resources

There are 33 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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