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ASM199724v1

Organism name:
Legionella pneumophila subsp. pneumophila ATCC 43290 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 43290
BioSample:
SAMN05721780
BioProject:
PRJNA341407
Submitter:
California Department of Public Health
Date:
2017/02/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001997245.1 (latest)
RefSeq assembly accession:
GCF_001997245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MTGE01
Assembly method:
CLCbio Genomic Workbench v. 8.0.2
Genome coverage:
120x
Sequencing technology:
Illumina MiSeq

IDs: 1005051 [UID] 4125578 [GenBank] 4137878 [RefSeq]

See Genome Information for Legionella pneumophila

There are 5728 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from ATCC
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/13/2017 12:16:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,073
CDS (total)::3,025
Genes (coding)::2,987
CDS (coding)::2,987
Genes (RNA)::48
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::40
ncRNAs::4
Pseudo Genes (total)::38
Pseudo Genes (ambiguous residues)::0 of 38
Pseudo Genes (frameshifted)::15 of 38
Pseudo Genes (incomplete)::16 of 38
Pseudo Genes (internal stop)::19 of 38
Pseudo Genes (multiple problems)::10 of 38
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,339,472
Total ungapped length3,339,472
Number of contigs26
Contig N50436,564
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)26

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,339,472263,339,472436,56400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella pneumophila subsp. pneumophila ATCC 43290Legionella pneumophila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000008485.1Legionella pneumophila subsp. pneumophila str. Philadelphia 1type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000008485.1Legionella pneumophilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5696.8595.19
Best-match type99.5696.8595.19

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna