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ASM161073v1

Organism name:
Legionella pneumophila (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: L10-023
BioSample:
SAMN03379010
BioProject:
PRJNA278111
Submitter:
Robert Koch Institute
Date:
2016/04/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_001610735.1 (latest)
RefSeq assembly accession:
GCF_001610735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 6.1
Genome coverage:
29x
Sequencing technology:
454

IDs: 716161 [UID] 3159898 [GenBank] 3176158 [RefSeq]

See Genome Information for Legionella pneumophila

There are 5728 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from Christian Luck and Klaus Heuner, University of Gottingen

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_001610735.1-RS_2024_04_16
Annotation Date::04/16/2024 03:03:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,490
CDSs (total)::3,435
Genes (coding)::3,313
CDSs (with protein)::3,313
Genes (RNA)::55
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::42
ncRNAs::4
Pseudo Genes (total)::122
CDSs (without protein)::122
Pseudo Genes (ambiguous residues)::0 of 122
Pseudo Genes (frameshifted)::105 of 122
Pseudo Genes (incomplete)::18 of 122
Pseudo Genes (internal stop)::3 of 122
Pseudo Genes (multiple problems)::4 of 122
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,785,576
Total ungapped length3,785,576
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001610745.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011105.1=NZ_CP011105.1
Plasmid unnamedCP011106.1=NZ_CP011106.1

Assembly statistics

MoleculeTotal
Length
All3,785,576
Chromosome 3,641,882
Plasmid unnamed143,694

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella pneumophilaLegionella pneumophila

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006364635.1Legionella pneumophilatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006364635.1Legionella pneumophilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.9881.3190.30
Best-match type96.9881.3190.30

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna