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ASM143417v1

Organism name:
Lactiplantibacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CGMCC 1.2437
BioSample:
SAMN02369435
BioProject:
PRJNA222257
Submitter:
Shanghai Majorbio
Date:
2015/11/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001434175.1 (latest)
RefSeq assembly accession:
GCF_001434175.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZEJ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina MiSeq; Illumina HiSeq

IDs: 578571 [UID] 2581608 [GenBank] 2680668 [RefSeq]

See Genome Information for Lactiplantibacillus plantarum

There are 1242 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length3,208,905
Total ungapped length3,208,852
Gaps between scaffolds0
Number of scaffolds48
Scaffold N50176,138
Scaffold L506
Number of contigs49
Contig N50176,138
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,208,905483,208,852176,13810

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lactiplantibacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437Lactiplantibacillus plantarum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014131735.1Lactiplantibacillus plantarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8598.59
Best-match type99.9999.8598.59

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna