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ASM74754v1

Organism name:
Bacillus thuringiensis serovar kurstaki str. YBT-1520 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: YBT-1520
BioSample:
SAMN02797740
BioProject:
PRJNA242813
Submitter:
Huazhong Agricultural University
Date:
2014/09/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000747545.1 (latest)
RefSeq assembly accession:
GCF_000747545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
PacBio v. 2.0
Reference guided assembly:
CP004069.1
Genome coverage:
150x
Sequencing technology:
454; Illumina; PacBio

IDs: 207151 [UID] 1195428 [GenBank] 1493038 [RefSeq]

See Genome Information for Bacillus thuringiensis

Pathogen Detection Resources

There are 1336 assemblies for this organism

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History (Show revision history)

Comment

Source bacteria is available from Jin He(hejin@mail.hzau.edu.cn) and Ziniu Yu(yz41@mail.hzau.edu.cn)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000747545.1-RS_2024_04_08
Annotation Date::04/08/2024 03:11:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,672
CDSs (total)::6,517
Genes (coding)::6,079
CDSs (with protein)::6,079
Genes (RNA)::155
rRNAs::14, 14, 14 (5S, 16S, 23S)
complete rRNAs::14, 14, 14 (5S, 16S, 23S)
tRNAs::108
ncRNAs::5
Pseudo Genes (total)::438
CDSs (without protein)::438
Pseudo Genes (ambiguous residues)::0 of 438
Pseudo Genes (frameshifted)::211 of 438
Pseudo Genes (incomplete)::245 of 438
Pseudo Genes (internal stop)::99 of 438
Pseudo Genes (multiple problems)::93 of 438
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,520,413
Total ungapped length6,520,413
Total number of chromosomes and plasmids10

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000747555.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP007607.1=NZ_CP007607.1
Plasmid pBMB11CP007612.1=NZ_CP007612.1
Plasmid pBMB69CP007613.1=NZ_CP007613.1
Plasmid pBMB95CP007614.1=NZ_CP007614.1
Plasmid pBMB293CP007615.1=NZ_CP007615.1
Plasmid pBMB400CP007616.1=NZ_CP007616.1
Plasmid pBMB2062CP007608.1=NZ_CP007608.1
Plasmid pBMB7921CP007609.1=NZ_CP007609.1
Plasmid pBMB8240CP007610.1=NZ_CP007610.1
Plasmid pBMB8513CP007611.1=NZ_CP007611.1

Assembly statistics

MoleculeTotal
Length
All6,520,413
Chromosome 5,607,837
Plasmid pBMB1112,003
Plasmid pBMB6969,416
Plasmid pBMB9594,637
Plasmid pBMB293293,574
Plasmid pBMB400416,210
Plasmid pBMB20622,062
Plasmid pBMB79217,921
Plasmid pBMB82408,240
Plasmid pBMB85138,513

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus thuringiensis serovar kurstaki str. YBT-1520Bacillus thuringiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000161615.1Bacillus thuringiensis serovar berliner ATCC 10792suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006094295.1Bacillus cereustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type96.3177.8481.40
Best-match type97.1473.0087.64

ANI result

Taxonomy check statusBest match statusComment
OKsynonym-matchna