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ASM62186v1

Organism name:
Pseudobutyrivibrio sp. MD2005 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: MD2005
BioSample:
SAMN02744014
BioProject:
PRJNA223452
Submitter:
DOE Joint Genome Institute
Date:
2014/04/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000621865.1 (latest)
RefSeq assembly accession:
GCF_000621865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JHXE01
Assembly method:
vpAllpaths v. r46652
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 141961 [UID] 994218 [GenBank] 1124158 [RefSeq]

See Genome Information for Pseudobutyrivibrio sp. MD2005

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1025990
Source DNA and Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Source DNA available from William Kelly (bill.kelly@agresearch.co.nz)
Organism available from William Kelly (bill.kelly@agresearch.co.nz)
Contacts: William Kelly (bill.kelly@agresearch.co.nz)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by ... JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::vpAllpaths v. r46652
investigation_type::bacteria_archaea
project_name::Pseudobutyrivibrio sp. MD2005
sequencing_meth::WGS
GOLD Stamp ID::Gi0054516
Gene Calling Method::Prodigal 2.5
##MIGS-Data-END##

Global statistics

Total sequence length3,086,437
Total ungapped length3,080,260
Gaps between scaffolds0
Number of scaffolds26
Scaffold N50226,157
Scaffold L506
Number of contigs33
Contig N50184,226
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)33

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,086,437263,080,260226,15770

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudobutyrivibrio sp. MD2005Pseudobutyrivibrio sp. MD2005

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900141825.1Pseudobutyrivibrio xylanivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.3922.3820.14

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna