U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM62104v1

Organism name:
Acinetobacter baylyi DSM 14961 = CIP 107474 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 14961
BioSample:
SAMN02743981
BioProject:
PRJNA221007
Submitter:
DOE Joint Genome Institute
Date:
2014/04/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000621045.1 (latest)
RefSeq assembly accession:
GCF_000621045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JHZI01
Assembly method:
vpAllpaths v. r46652
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 141551 [UID] 993378 [GenBank] 1106938 [RefSeq]

See Genome Information for Acinetobacter baylyi

There are 20 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1011151
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::vpAllpaths v. r46652
collection_date::1995
country::Australia
environment::Sludge
investigation_type::bacteria_archaea
isol_growth_condt::12892111
lat_lon::-36.752914 144.28545
project_name::Acinetobacter baylyi DSM 14961
sequencing_meth::WGS
ref_biomaterial::DSM 14961
rel_to_oxygen::Aerobe
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi11069
Type Strain::Yes
Funding Program::DOE-CSP 2012
Gene Calling Method::Prodigal 2.5
Isolation Site::Activated sludge
Motility::Nonmotile
Temperature Range::Mesophile
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length3,603,955
Total ungapped length3,601,635
Gaps between scaffolds0
Number of scaffolds27
Scaffold N50296,793
Scaffold L505
Number of contigs32
Contig N50214,760
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)30

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,603,955273,601,635296,79350

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter baylyi DSM 14961 = CIP 107474Acinetobacter baylyi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000368685.1Acinetobacter baylyi DSM 14961 = CIP 107474type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000368685.1Acinetobacter baylyitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.4898.65
Best-match type99.9998.4898.65

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna