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ASM51816v1

Organism name:
Bartonella elizabethae F9251 = ATCC 49927 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 49927
BioSample:
SAMN02585007
BioProject:
PRJNA223122
Submitter:
DOE Joint Genome Institute
Date:
2014/01/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000518165.1 (latest)
RefSeq assembly accession:
GCF_000518165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADB01
Assembly method:
Unknown program v. before 2013-10-18
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 91761 [UID] 891178 [GenBank] 1107358 [RefSeq]

See Genome Information for Bartonella elizabethae

There are 6 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1013301
Source DNA and organism available from Tim Lilburn at the American Type Culture Collection (ATCC) (TLilburn@atcc.org)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The JGI and collaborators ... endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376) 
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
environment::Host
investigation_type::bacteria_archaea
project_name::Bartonella elizabethae ATCC 49927
sequencing_meth::WGS
ref_biomaterial::ATCC 49927
GOLD Stamp ID::Gi22380
Isolation Site::Blood - human Brighton Massachusetts, United States
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length1,963,970
Total ungapped length1,959,760
Gaps between scaffolds0
Number of scaffolds39
Scaffold N50279,953
Scaffold L503
Number of contigs46
Contig N50266,570
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,963,970391,959,760279,95370

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bartonella elizabethae F9251 = ATCC 49927Bartonella elizabethae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_902825135.1Bartonella elizabethae F9251 = ATCC 49927type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902825135.1Bartonella elizabethaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9798.4498.33
Best-match type99.9798.4498.33

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna