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ASM41682v2

Organism name:
Pseudomonas syringae pv. actinidiae ICMP 19100 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ICMP 19100
BioSample:
SAMN02470805
BioProject:
PRJNA167423
Submitter:
The New Zealand Institute for Plant & Food Research Limited
Date:
2013/07/01
Assembly type:
na
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000416825.2 (latest)
RefSeq assembly accession:
GCF_000416825.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AOKC01
Assembly method:
Soap v. 1.05
Genome coverage:
30x
Sequencing technology:
Illumina GA IIx

IDs: 565211 [UID] 2542088 [GenBank] 2634418 [RefSeq]

See Genome Information for Pseudomonas syringae

There are 832 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.
Bacteria available from: Matt ... Templeton, Genomics, Plant and Food Research, Canterbury Agriculture & Science Centre, Gerald Street, Lincoln, Canterbury 7608, New Zealand.
Source DNA available from: Ashley Lu, Genomics, Plant and Food Research, Canterbury Agriculture & Science Centre, Gerald Street, Lincoln, Canterbury 7608, New Zealand.  more

Global statistics

Total sequence length6,216,613
Total ungapped length6,216,517
Gaps between scaffolds0
Number of scaffolds532
Scaffold N5026,586
Scaffold L5077
Number of contigs534
Contig N5026,308
Contig L5077
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)532

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,216,6135326,216,51726,58620

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas syringae pv. actinidiae ICMP 19100Pseudomonas syringae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000658965.1Pseudomonas syringae pv. actinidiae ICMP 9617pathovar

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000658965.1Pseudomonas syringaepathovar

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.2084.5989.18
Best-match type98.2084.5989.18

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna