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Stre_inte_ATCC_27335_V1

Organism name:
Streptococcus intermedius SK54 = ATCC 27335 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 27335
BioSample:
SAMN02596988
BioProject:
PRJNA197004
Submitter:
Broad Institute
Date:
2013/06/21
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000413475.1 (latest)
RefSeq assembly accession:
GCF_000413475.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ATFK01
Assembly method:
allpaths v. R44024
Genome coverage:
143.0x
Sequencing technology:
Illumina

IDs: 708788 [UID] 708788 [GenBank] 717228 [RefSeq]

See Genome Information for Streptococcus intermedius

There are 63 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Cori Leonetti, Alice Kirega, Floyd E. Dewhirst, and Jacques Izard. (Molecular Genetics, The Forsyth Institute, Boston, ... MA 02115, USA).
Bacteria provided by Cori Leonetti, Alice Kirega, Floyd E. Dewhirst, and Jacques Izard. (Molecular Genetics, The Forsyth Institute, Boston, MA 02115, USA).
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length1,951,449
Total ungapped length1,951,449
Number of contigs10
Contig N50266,223
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)10

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,951,449101,951,449266,22300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus intermedius SK54 = ATCC 27335Streptococcus intermedius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900475975.1Streptococcus intermediustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900475975.1Streptococcus intermediustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.7799.71
Best-match type99.9998.7799.71

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna