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AgeorgiaeF0490v1.0

Organism name:
Schaalia georgiae F0490 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: F0490
BioSample:
SAMN00792232
BioProject:
PRJNA78895
Submitter:
J. Craig Venter Institute
Date:
2012/07/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000277685.1 (latest)
RefSeq assembly accession:
GCF_000277685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AKFS01
Assembly method:
Newbler v. 2.6
Genome coverage:
28.79x
Sequencing technology:
Illumina

IDs: 484568 [UID] 398138 [GenBank] 484568 [RefSeq]

See Genome Information for Schaalia georgiae

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project.
This project is co-owned with the Human Microbiome Project DACC.

Global statistics

Total sequence length2,477,360
Total ungapped length2,477,360
Number of contigs306
Contig N5015,007
Contig L5046
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)306

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,477,3603062,477,36015,00700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Schaalia georgiae F0490Schaalia georgiae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000429245.1Schaalia georgiae DSM 6843type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000429245.1Schaalia georgiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8393.9893.39
Best-match type98.8393.9893.39

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna