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Fuso_mor_ATCC9817_V2

Organism name:
Fusobacterium mortiferum ATCC 9817 (fusobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ATCC 9817
BioSample:
SAMN02463687
BioProject:
PRJNA32421
Submitter:
Broad Institute
Date:
2011/07/27
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000158195.2 (latest)
RefSeq assembly accession:
GCF_000158195.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACDB02
Assembly method:
Newbler v. 2.1-PreRelease-4/28/2009
Genome coverage:
33x
Sequencing technology:
454

IDs: 298568 [UID] 296768 [GenBank] 298568 [RefSeq]

See Genome Information for Fusobacterium mortiferum

There are 44 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Strauss, J.C., Ambrose, C.E., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, ... N1G 2W1, Canada).
Bacteria provided by Moore, W.E. and Holdeman, L.V. (American Type Culture Collection - ATCC). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.
Product names were updated in June 2013  more

Global statistics

Total sequence length2,671,036
Total ungapped length2,667,436
Gaps between scaffolds0
Number of scaffolds8
Scaffold N50754,930
Scaffold L502
Number of contigs44
Contig N50128,600
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)44

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,671,03682,667,436754,930360

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Fusobacterium mortiferum ATCC 9817Fusobacterium mortiferum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900450765.1Fusobacterium necrogenestype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.6148.2563.86

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna