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Source database (GenBank or RefSeq) File type

ASM14374v1

Organism name:: Lactiplantibacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: ATCC 14917
BioSample:: SAMN00001478
BioProject:: PRJNA31515
Submitter:: Baylor College of Medicine
Date:: 2010/07/22
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000143745.1 (latest)
RefSeq assembly accession:: GCF_000143745.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: ACGZ02
Assembly method:: Newbler Assembler v. 1.1.03.24_64
Genome coverage:: 36x
Sequencing technology:: 454

IDs: 236218 [UID] 232148 [GenBank] 236218 [RefSeq]

See Genome Information for Lactiplantibacillus plantarum

Pathogen Detection Resources

There are 1242 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000143745.1	=	GCF_000143745.1	ASM14374v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Lactobacillus plantarum subsp. plantarum ATCC 14917

 Strain source, body site: Gastrointestinal tract

 This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. Source DNA provided by American Type Culture ... Collection (ATCC14917). Funded by "Genomes and Genetics at BCM-HGSC" (U54 HG003273).
Product names were updated in June 2013  more

Global statistics

Total sequence length	3,212,261
Total ungapped length	3,198,761
Gaps between scaffolds	0
Number of scaffolds	9
Scaffold N50	554,392
Scaffold L50	3
Number of contigs	36
Contig N50	152,365
Contig L50	6
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	36

	ANI	Query coverage	Subject coverage
Declared type	99.99	100.00	98.41
Best-match type	99.99	100.00	98.41

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ASM14374v1

See Genome Information for Lactiplantibacillus plantarum

Pathogen Detection Resources

There are 1242 assemblies for this organism

History (Show revision history)

Comment

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