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Source database (GenBank or RefSeq) File type

Phypa V3

Organism name:

Physcomitrium patens (mosses)

Infraspecific name:

Ecotype: Gransden 2004

BioSample:

SAMN00120126

BioProject:

PRJNA13064

Submitter:

Moss Genome Consortium

Date:

2018/01/24

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000002425.2 (latest)

RefSeq assembly accession:

GCF_000002425.4 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

ABEU02

Assembly method:

Arachne v. 3

Expected final version:

yes

Genome coverage:

18.49x

Sequencing technology:

Sanger

IDs: 1532781 [UID] 5927858 [GenBank] 6289628 [RefSeq]

See Genome Information for Physcomitrium patens

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000002425.2	≠	GCF_000002425.4	Phypa V3	Chromosome	Latest GenBank, Latest RefSeq
GCA_000002425.1	≠	GCF_000002425.3	V1.1	Scaffold	Replaced GenBank, Replaced RefSeq
GCA_000002425.1	≠	GCF_000002425.2	V1.1	Scaffold	Replaced GenBank, Replaced RefSeq
n/a	n/a	GCF_000002425.1	ASM242v1	Chromosome	RefSeq suppressed

Comment

Global statistics

Total sequence length	472,081,022
Total ungapped length	466,100,502
Gaps between scaffolds	0
Number of scaffolds	359
Scaffold N50	17,435,539
Scaffold L50	12
Number of contigs	3,002
Contig N50	465,069
Contig L50	311
Total number of chromosomes and plasmids	29
Number of component sequences (WGS or clone)	359

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM009316.1	=	NC_037253.1	0
Chromosome 2	CM009317.1	=	NC_037254.1	0
Chromosome 3	CM009318.1	=	NC_037255.1	0
Chromosome 4	CM009319.1	=	NC_037256.1	0
Chromosome 5	CM009320.1	=	NC_037257.1	0
Chromosome 6	CM009321.1	=	NC_037258.1	0
Chromosome 7	CM009322.1	=	NC_037259.1	0
Chromosome 8	CM009323.1	=	NC_037260.1	0
Chromosome 9	CM009324.1	=	NC_037261.1	0
Chromosome 10	CM009325.1	=	NC_037262.1	0
Chromosome 11	CM009326.1	=	NC_037263.1	0
Chromosome 12	CM009327.1	=	NC_037264.1	0
Chromosome 13	CM009328.1	=	NC_037265.1	0
Chromosome 14	CM009329.1	=	NC_037266.1	0
Chromosome 15	CM009330.1	=	NC_037267.1	0
Chromosome 16	CM009331.1	=	NC_037268.1	0
Chromosome 17	CM009332.1	=	NC_037269.1	0
Chromosome 18	CM009333.1	=	NC_037270.1	0
Chromosome 19	CM009334.1	=	NC_037271.1	0
Chromosome 20	CM009335.1	=	NC_037272.1	0
Chromosome 21	CM009336.1	=	NC_037273.1	0
Chromosome 22	CM009337.1	=	NC_037274.1	0
Chromosome 23	CM009338.1	=	NC_037275.1	0
Chromosome 24	CM009339.1	=	NC_037276.1	0
Chromosome 25	CM009340.1	=	NC_037277.1	0
Chromosome 26	CM009341.1	=	NC_037278.1	0
Chromosome 27	CM009342.1	=	NC_037279.1	0
unplaced	n/a	n/a	n/a	330

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	AB251495.1	=	NC_007945.1
Chloroplast Pltd	AP005672.1	=	NC_005087.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	471,852,792	357	465,872,272	17,435,539	2,643
Chromosome 1	30,242,098	1	29,887,185	30,242,098	161
Chromosome 2	25,998,084	1	25,592,781	25,998,084	127
Chromosome 3	25,551,832	1	25,234,495	25,551,832	113
Chromosome 4	22,344,759	1	22,021,611	22,344,759	125
Chromosome 5	20,681,290	1	20,431,820	20,681,290	108
Chromosome 6	19,533,230	1	19,311,045	19,533,230	101
Chromosome 7	18,116,774	1	17,951,850	18,116,774	102
Chromosome 8	17,934,281	1	17,695,630	17,934,281	96
Chromosome 9	17,794,193	1	17,627,199	17,794,193	75
Chromosome 10	17,530,623	1	17,383,711	17,530,623	84
Chromosome 11	17,494,229	1	17,319,195	17,494,229	103
Chromosome 12	17,435,539	1	17,200,914	17,435,539	107
Chromosome 13	17,250,819	1	17,121,806	17,250,819	71
Chromosome 14	17,248,380	1	17,095,692	17,248,380	66
Chromosome 15	17,009,704	1	16,734,584	17,009,704	88
Chromosome 16	16,572,167	1	16,391,258	16,572,167	79
Chromosome 17	15,984,037	1	15,807,734	15,984,037	89
Chromosome 18	15,735,161	1	15,621,094	15,735,161	87
Chromosome 19	15,673,097	1	15,406,137	15,673,097	93
Chromosome 20	15,486,712	1	15,391,938	15,486,712	61
Chromosome 21	15,510,460	1	15,210,393	15,510,460	127
Chromosome 22	15,354,560	1	15,110,503	15,354,560	96
Chromosome 23	15,138,416	1	14,876,498	15,138,416	81
Chromosome 24	13,755,829	1	13,576,981	13,755,829	65
Chromosome 25	11,183,739	1	11,059,325	11,183,739	49
Chromosome 26	10,125,990	1	9,940,387	10,125,990	86
Chromosome 27	5,299,892	1	5,254,735	5,299,892	24
unplaced	3,866,897	330	3,615,771	21,755	179

Molecule	Total Length
All	228,230
Mitochondrion MT	105,340
Chloroplast Pltd	122,890

Assembly

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Phypa V3

See Genome Information for Physcomitrium patens

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear