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SZ

Organism name:
Physcomitrium patens (mosses)
Isolate:
SZ-1
BioSample:
SAMN19955574
BioProject:
PRJNA742485
Submitter:
Shenzhen Institutes of Advanced Technology
Date:
2022/11/15
Assembly level:
Complete Genome
Genome representation:
partial
Excluded from RefSeq:
  • partial
GenBank assembly accession:
GCA_026122775.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAIWPX01
Assembly method:
NextDenovo v. 2.3.1
Expected final version:
yes
Genome coverage:
65.0x
Sequencing technology:
Oxford Nanopore MinION; Illumina NovaSeq; MGISEQ-2000RS

IDs: 14410541 [UID] 37392828 [GenBank]

See Genome Information for Physcomitrium patens

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length477,721,153
Total ungapped length477,721,153
Total number of chromosomes and plasmids26

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_026122785.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CM047446.1n/an/a
Chromosome 2CM047447.1n/an/a
Chromosome 3CM047448.1n/an/a
Chromosome 4CM047449.1n/an/a
Chromosome 5CM047450.1n/an/a
Chromosome 6CM047451.1n/an/a
Chromosome 7CM047452.1n/an/a
Chromosome 8CM047453.1n/an/a
Chromosome 9CM047454.1n/an/a
Chromosome 10CM047455.1n/an/a
Chromosome 11CM047456.1n/an/a
Chromosome 12CM047457.1n/an/a
Chromosome 13CM047458.1n/an/a
Chromosome 14CM047459.1n/an/a
Chromosome 15CM047460.1n/an/a
Chromosome 16CM047461.1n/an/a
Chromosome 17CM047462.1n/an/a
Chromosome 18CM047463.1n/an/a
Chromosome 19CM047464.1n/an/a
Chromosome 20CM047465.1n/an/a
Chromosome 21CM047466.1n/an/a
Chromosome 22CM047467.1n/an/a
Chromosome 23CM047468.1n/an/a
Chromosome 24CM047469.1n/an/a
Chromosome 25CM047470.1n/an/a
Chromosome 26CM047471.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All477,721,15326477,721,15317,690,20700
Chromosome 131,206,330131,206,33031,206,33000
Chromosome 226,299,657126,299,65726,299,65700
Chromosome 325,962,184125,962,18425,962,18400
Chromosome 422,809,574122,809,57422,809,57400
Chromosome 521,062,955121,062,95521,062,95500
Chromosome 619,874,350119,874,35019,874,35000
Chromosome 718,509,632118,509,63218,509,63200
Chromosome 818,440,651118,440,65118,440,65100
Chromosome 918,156,879118,156,87918,156,87900
Chromosome 1017,987,474117,987,47417,987,47400
Chromosome 1117,899,468117,899,46817,899,46800
Chromosome 1217,662,714117,662,71417,662,71400
Chromosome 1317,690,207117,690,20717,690,20700
Chromosome 1417,429,229117,429,22917,429,22900
Chromosome 1517,202,109117,202,10917,202,10900
Chromosome 1616,873,323116,873,32316,873,32300
Chromosome 1716,322,363116,322,36316,322,36300
Chromosome 1816,258,369116,258,36916,258,36900
Chromosome 1916,156,622116,156,62216,156,62200
Chromosome 2015,665,091115,665,09115,665,09100
Chromosome 2115,882,410115,882,41015,882,41000
Chromosome 2215,294,000115,294,00015,294,00000
Chromosome 2315,420,287115,420,28715,420,28700
Chromosome 2414,201,299114,201,29914,201,29900
Chromosome 2516,757,396116,757,39616,757,39600
Chromosome 2610,696,580110,696,58010,696,58000