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Para_john_CL02T12C29_V1

Organism name:
Parabacteroides johnsonii CL02T12C29 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CL02T12C29
BioSample:
SAMN02463940
BioProject:
PRJNA64889
Submitter:
Broad Institute
Date:
2012/10/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000307375.1 (latest)
RefSeq assembly accession:
GCF_000307375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AGZP01
Assembly method:
ALLPATHS v. R37654
Genome coverage:
297.0x
Sequencing technology:
Illumina

IDs: 472928 [UID] 449388 [GenBank] 472928 [RefSeq]

See Genome Information for Parabacteroides johnsonii

There are 58 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Michael J. Coyne, Laurie E. Comstock. (Brigham and Women's Hospital, Channing Laboratory, 181 Longwood Avenue, Boston ... MA 02115).
Bacteria provided by Naamah L. Zitomersky, Michael J. Coyne, Laurie E. Comstock. (Brigham and Women's Hospital, Channing Laboratory, 181 Longwood Avenue, Boston MA 02115). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length4,629,061
Total ungapped length4,613,502
Gaps between scaffolds0
Number of scaffolds6
Scaffold N501,411,232
Scaffold L502
Number of contigs37
Contig N50224,005
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)37

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,629,06164,613,5021,411,232310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides johnsonii CL02T12C29Parabacteroides johnsonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025151045.1Parabacteroides johnsonii DSM 18315type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025151045.1Parabacteroides johnsoniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9183.1880.80
Best-match type98.9183.1880.80

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna