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ASM27480v1

Organism name:
Helicobacter pylori Hp P-2 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Hp P-2
BioSample:
SAMN00778901
BioProject:
PRJNA64173
Submitter:
Institute for Genome Sciences
Date:
2012/06/28
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000274805.1 (latest)
RefSeq assembly accession:
GCF_000274805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AKPJ01
Assembly method:
Celera Assembler v. 6.1
Genome coverage:
74.91x
Sequencing technology:
Illumina;454

IDs: 487448 [UID] 394098 [GenBank] 487448 [RefSeq]

See Genome Information for Helicobacter pylori

Pathogen Detection Resources

There are 4493 assemblies for this organism

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History (Show revision history)

Comment

Samples deposited at Biodefense and Emerging Infections Research Resources Repository (BEI resources)

Global statistics

Total sequence length1,693,870
Total ungapped length1,693,870
Number of contigs6
Contig N501,132,461
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)6

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,693,87061,693,8701,132,46100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Helicobacter pylori Hp P-2Helicobacter pylori

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000258845.1Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000258845.1Helicobacter pyloritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.1987.9293.05
Best-match type94.1987.9293.05

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna