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ASM19231v1

Organism name:
Helicobacter pylori 2017 (e-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2017
BioSample:
SAMN02603712
BioProject:
PRJNA62769
Submitter:
Pathogen Biology Laboratory, University of Hyderabad
Date:
2011/03/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000192315.1 (latest)
RefSeq assembly accession:
GCF_000192315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 373068 [UID] 249668 [GenBank] 373068 [RefSeq]

See Genome Information for Helicobacter pylori

There are 4493 assemblies for this organism

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History (Show revision history)

Comment

Source DNA available from Francis Megraud, Centre National de Reference des Campylobacter and Helicobacter, Bordeaux, France
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/03/2023 10:27:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,515
CDSs (total)::1,473
Genes (coding)::1,363
CDSs (with protein)::1,363
Genes (RNA)::42
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::36
ncRNAs::3
Pseudo Genes (total)::110
CDSs (without protein)::110
Pseudo Genes (ambiguous residues)::0 of 110
Pseudo Genes (frameshifted)::83 of 110
Pseudo Genes (incomplete)::27 of 110
Pseudo Genes (internal stop)::14 of 110
Pseudo Genes (multiple problems)::13 of 110
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,548,238
Total ungapped length1,548,238
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000192325.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002571.1=NC_017374.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,548,238

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Helicobacter pylori 2017Helicobacter pylori

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001312765.1Helicobacter pyloritype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001312765.1Helicobacter pyloritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.1693.4790.35
Best-match type94.1693.4790.35

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna