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ASM48421v1

Organism name:
Salmonella enterica subsp. enterica serovar Newport str. 637564_17 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 637564_17
BioSample:
SAMN02415175
BioProject:
PRJNA62865
Submitter:
FDA
Date:
2013/10/25
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000484215.1 (latest)
RefSeq assembly accession:
GCF_000484215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AYDM01
Assembly method:
Newbler v. 2.3
Genome coverage:
17x
Sequencing technology:
454 GS FLX

IDs: 72341 [UID] 829298 [GenBank] 849478 [RefSeq]

See Genome Information for Salmonella enterica

There are 527483 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

Bacterial culture available from ... Dwayne Roberson, FDA College Park Campus, 5100 Paint Branch Parkway, College Park, MD 20740.  more

Global statistics

Total sequence length4,674,436
Total ungapped length4,674,436
Number of contigs82
Contig N50127,248
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)82

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,674,436824,674,436127,24800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Salmonella enterica subsp. enterica serovar Newport str. 637564_17Salmonella enterica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000006945.2Salmonella enterica subsp. enterica serovar Typhimurium str. LT2type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000006945.2Salmonella entericatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9895.6690.31
Best-match type98.9895.6690.31

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna