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Taxonomy

Callithrix jacchus

White-tufted-ear marmoset (Callithrix jacchus) is a species of primate in the family Cebidae.

Taxonomy ID: 9483

Genomes Genes Genome Data Viewer

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Items: 13

  • Filters activated: Latest, Exclude anomalous. Clear all to show 16 items.
1.

mCalJa1.2.pat.X

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Sex:
male
Submitter:
Vertebrate Genomes Project
Date:
2021/04/28
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_011100555.2 (latest)
RefSeq assembly accession:
GCF_011100555.1 (latest)
IDs:
9936991 [UID] 26492428 [GenBank] 41093638 [RefSeq]

2.

mCalJac1.2.pat

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Sex:
male
Submitter:
Vertebrate Genomes Project
Date:
2021/04/28
Assembly type:
haploid (paternal haplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_011100535.2 (latest)
RefSeq assembly accession:
n/a
IDs:
9936981 [UID] 26492298 [GenBank]

3.

mCalJac1.mat

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Sex:
male
Submitter:
Vertebrate Genomes Project
Date:
2020/03/10
Assembly type:
haploid (maternal haplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_011078405.1 (latest)
RefSeq assembly accession:
n/a
IDs:
6117461 [UID] 17408508 [GenBank]

4.

CJA1912RKC

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Submitter:
Keio University / RIKEN
Date:
2020/06/03
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_013373975.1 (latest)
RefSeq assembly accession:
n/a
IDs:
7301191 [UID] 20163678 [GenBank]

5.

CJ1700_CJA_hifiasm-v0.15.2.pri

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Sex:
female
Submitter:
University of Washington
Date:
2023/06/07
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030222145.1 (latest)
RefSeq assembly accession:
n/a
IDs:
16840271 [UID] 43266328 [GenBank]

6.

CJ1700_CJA_hifiasm-v0.15.2.alt

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Sex:
female
Submitter:
University of Washington
Date:
2023/06/07
Assembly type:
alternate-pseudohaplotype (alternate pseudohaplotype of diploid)
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_030222185.1 (latest)
RefSeq assembly accession:
n/a
IDs:
16840291 [UID] 43266368 [GenBank]

7.

CJ2019_assembly

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Submitter:
Keio University
Date:
2019/12/23
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_009811775.1 (latest)
RefSeq assembly accession:
n/a
IDs:
5424271 [UID] 15706388 [GenBank]

8.

ASM275486v1

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Infraspecific name:
Breed: NEPRC
Sex:
female
Submitter:
Broad Institute
Date:
2017/11/06
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002754865.1 (latest)
RefSeq assembly accession:
n/a
IDs:
1432951 [UID] 5620578 [GenBank]

9.

CIEA01

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Submitter:
Department of Biosciences and Informatics, Keio University
Date:
2015/08/07
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001269965.1 (latest)
RefSeq assembly accession:
n/a
IDs:
474011 [UID] 2242548 [GenBank]

10.

ASM83236v1

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Infraspecific name:
Breed: 186/17066
Sex:
female
Submitter:
UN-NHPGC
Date:
2015/01/29
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000832365.1 (latest)
RefSeq assembly accession:
n/a
IDs:
250071 [UID] 1513478 [GenBank]

11.

Callithrix_jacchus_cj1700_1.1

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Infraspecific name:
Strain: cj1700
Sex:
female
Submitter:
McDonnell Genome Institute at Washington University
Date:
2020/05/22
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_009663435.2 (latest)
RefSeq assembly accession:
GCF_009663435.1 (suppressed)
Excluded from RefSeq:
superseded by newer assembly for species
IDs:
7157801 [UID] 19676488 [GenBank] 19716738 [RefSeq]

12.

Callithrix jacchus-3.2

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Submitter:
Washington University (WashU)
Date:
2010/01/22
Assembly level:
Chromosome
Genome representation:
full
Synonyms:
calJac3
GenBank assembly accession:
GCA_000004665.1 (latest)
RefSeq assembly accession:
GCF_000004665.1 (suppressed)
Excluded from RefSeq:
superseded by newer assembly for species
IDs:
6608 [UID] 5898 [GenBank] 6608 [RefSeq]

13.

Callithrix_jacchus_cj1700_chrY

Organism:
Callithrix jacchus (white-tufted-ear marmoset)
Sex:
pooled male and female
Submitter:
Whitehead Institute for Biomedical Research
Date:
2020/05/22
Assembly level:
Chromosome
Genome representation:
partial
GenBank assembly accession:
GCA_013138085.1 (latest)
RefSeq assembly accession:
n/a
Excluded from RefSeq:
partial
IDs:
7157331 [UID] 19672128 [GenBank]

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