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Myro_odor_CCUG_12901_V1

Organism name:
Myroides odoratimimus CCUG 12901 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CCUG 12901
BioSample:
SAMN02463910
BioProject:
PRJNA52193
Submitter:
Broad Institute
Date:
2012/01/11
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000242095.1 (latest)
RefSeq assembly accession:
GCF_000242095.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AGED01
Assembly method:
ALLPATHS v. R37654
Genome coverage:
400x
Sequencing technology:
Illumina

IDs: 469588 [UID] 327298 [GenBank] 469588 [RefSeq]

See Genome Information for Myroides odoratimimus

There are 72 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by Huys, G. (BCCM/LMG Bacteria Collection, Laboratory of Microbiology, Faculty of Sciences, Ghent University K.L. Ledeganckstraat 35, ... B-9000 Gent, BELGIUM).
Bacteria provided by Huys, G. (BCCM/LMG Bacteria Collection, Laboratory of Microbiology, Faculty of Sciences, Ghent University K.L. Ledeganckstraat 35, B-9000 Gent, BELGIUM). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length4,070,988
Total ungapped length4,037,729
Gaps between scaffolds0
Number of scaffolds3
Scaffold N503,471,562
Scaffold L501
Number of contigs54
Contig N50127,555
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,070,98834,037,7293,471,562510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Myroides odoratimimus CCUG 12901Myroides odoratimimus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900453765.1Myroides odoratimimustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900453765.1Myroides odoratimimustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.5689.8784.88
Best-match type98.5689.8784.88

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna