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ASM2861063v1

Organism name:
Alkalicoccobacillus gibsonii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 8722
BioSample:
SAMN33041223
BioProject:
PRJNA931000
Submitter:
Fujian Academy of Agricultural Sciences
Date:
2023/02/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_028610635.1 (latest)
RefSeq assembly accession:
GCF_028610635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAQQWR01
Assembly method:
SOAPdenovo v. 2.04
Expected final version:
no
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 15881951 [UID] 40759858 [GenBank] 40883148 [RefSeq]

See Genome Information for Alkalicoccobacillus gibsonii

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,932,415
Total ungapped length3,932,215
Gaps between scaffolds0
Number of scaffolds15
Scaffold N50971,510
Scaffold L502
Number of contigs17
Contig N50692,541
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)15

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,932,415153,932,215971,51020

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Alkalicoccobacillus gibsoniiAlkalicoccobacillus gibsonii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023703085.1Alkalicoccobacillus plakortidissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.0828.6725.82

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected